- Brown Spirit (buy for 5 Tokens)
- Red Spirit (buy for 5 Tokens)
- Red Spirits are first found on the Level 6 Rank C mission "Lightning Traitors".
- Yellow Spirit (buy for 10 Tokens)
- Green Spirit (buy for 10 Tokens)
- Purple Spirit (buy for 20 Tokens)
- Black Spirit (buy for 20 Tokens)
- Blue Spirit (buy for 30 Tokens)
- White Spirit (buy for 50 Tokens)
Ninja Spirits can be obtained by completing missions, by buying them from Futoru Onko in the Advanced Jutsu Facility or from Yamamoto in the Backsmith, both with Tokens, or, if lucky, getting them from the Daily Spin. Ninja Spirits are used to upgrade skills in the Advanced Jutsu Facility, like Magatama are used to learn pet skills and forging weapons and TP are used to learn and upgrade Talent skills. Out of all of the Ninja Spirits, the Brown Spirit is the most common spirit to obtain.